Extended Data Fig. 16: Predicting anatomical regions based on imputed MERFISH transcriptomes.
From: A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
(a) Correspondence between assigned CCFv3 regions for MERFISH cells in glutamatergic, dopaminergic, and serotonergic cell types to predicted CCFv3 regions based on imputed transcriptomes of these MERFISH cells. Each row is normalized by dividing by the maximum number. Insert in the lower left corner shows the correspondence between assigned and predicted regions for glutamatergic, dopaminergic, and serotonergic cell types. Insert in the upper right corner highlights the correspondence between assigned and predicted subregions in midbrain. (b) Correspondence between assigned CCFv3 regions for MERFISH cells in GABAergic cell types and predicted CCFv3 regions based on imputed transcriptomes of these MERFISH cells. Insert in the lower left corner shows the correspondence between assigned and predicted regions for GABAergic cell types. Insert in the upper right corner highlights the correspondence between assigned and predicted subregions in midbrain.
