Extended Data Fig. 3: Maximum-likelihood (ML) tree with recombinant, hypervariable and 16S, 23S genes excluded. | Nature

Extended Data Fig. 3: Maximum-likelihood (ML) tree with recombinant, hypervariable and 16S, 23S genes excluded.

From: Redefining the treponemal history through pre-Columbian genomes from Brazil

Extended Data Fig. 3: Maximum-likelihood (ML) tree with recombinant, hypervariable and 16S, 23S genes excluded.The alternative text for this image may have been generated using AI.

ML tree obtained after excluding tp0897, tp0316, tp0317, 16 S, 23 S and recombinant genes from the multiple genome alignment using GTR + G + I as the evolutionary model and 1000 bootstrap repetitions. The different clades corresponding to TPE and TEN, and the Nichols and SS14 lineages of TPA are colour-coded according to the legend. Bootstrap support values higher than 70% are indicated by pink circles, with circle size proportional to bootstrap support.

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