Extended Data Table 2 Comparison with alternative approaches for the automated building of nucleotides

From: Automated model building and protein identification in cryo-EM maps

  1. MA stands for ModelAngelo, CR for CryoREAD, and DT for DeepTracer. Phosphor RMSD is the root mean squared deviation of the predicted P atoms against that of the deposition. Backbone RMSD is similar but for the OP1, P, OP2, and O5’ atoms of the nucleotide backbones. Backbone recall is the fraction of the deposited residues that were predicted to be within 3 Å (as measured between P atoms). Backbone precision is the fraction of predicted residues that have a corresponding residue present in the deposition within 3 Å. Base accuracy is the fraction of the predicted residues that have a correctly predicted nucleotide base. Finally, completeness is the fraction of deposited residues that were predicted with the correct base annotation. Numbers indicated in boldface are the best in each metric.
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