Extended Data Fig. 3: Phylogeny estimated from Anae+ dataset with CAT-PMSF model.
From: A robustly rooted tree of eukaryotes reveals their excavate ancestry
Amino acid exchangeability matrix and site frequency profiles were estimated on the alignment and a guide tree in PhyloBayes. Rate variation was modelled with the Free Rate model with four classes. Support values indicated are from 100 replicates of non-parametric bootstrapping.
