Extended Data Fig. 13: Developmental datasets integrated with the P56 Subpallium GABAergic neuron taxonomy.
From: Transcriptomic and spatial organization of telencephalic GABAergic neurons
(a,b) Comparison of UMI counts (a) and gene counts (b) per cell for the post-QC developmental and adult (10xv3) datasets. Boxplots show median, interquartile range and 1.5× interquartile range. Number of cells in each dataset: AIBS_E11.5_E14.5, n = 9,296; AIBS_P0, n = 54,247; AIBS_P4, n = 83,650; AIBS_P8, n = 94,535; AIBS_P12, n = 68,636; AIBS_P14, n = 76,784; AIBS_P56, n = 341,644; Allaway_2021, n = 18,131; Kaplan_2024, n = 26,344; LaManno_2021, n = 39,772; Lee_2022A, n = 18,200; Lee_2022B, n = 72,589; Mayer_2018A, n = 7,777; Mayer_2018B, n = 27,472; Turrero-Garcia_2021, n = 17,136. (c) UMAP representation of all cells across embryonic to P56 timepoints following scVI integration, coloured by dataset. (d) Confusion matrix between chronological age and predicted age (see Methods).
