Extended Data Fig. 7: Density fits of modelled glycosylations.
From: A nanobody specific to prefusion glycoprotein B neutralizes HSV-1 and HSV-2
(a) N-acetyl-glucosamine sugars were added to glycosylation sites on HSV-1 gB prefusion (Nb1_gbHSV bound) manually using ChimeraX and refined using TEMPy-ReFF v1.2.59. Asparagine residues carrying the glycosylation are marked in one-letter code on chain A of gB. (b) as in (a) for HSV-2 gB in prefusion conformation. (c) as in (a) for HSV-2 gB in postfusion conformation. The density at position N425 did not allow confident fitting of N-acetyl-glucosamine.
