Extended Data Fig. 3: TF wave analysis.
From: Atlas-guided discovery of transcription factors for T cell programming
a, Schematic of the analysis pipeline. b, Selection of algorithms and parameters for TF wave analysis. The Pearson correlation was chosen for the distance metric, with k = 7 chosen as the optimal cluster number. c, Seven TF waves. Circles represent specific cell states. Red color indicates normalized PageRank scores. d, List of TF members in each wave. e, Heatmap of biological pathways enriched in each TF wave. Red-blue color scale indicates the p-value.
