Extended Data Fig. 5: Geographic distribution of mobile genetic elements which did not become fixed in the population.

a. Plasmid pSA7G1 b. Proportion of samples at each site with lysogenic K139 phage in the genome c. Location of V. cholerae samples co-sequenced with ICP1 lytic phage. Samples which were excluded from the main analysis due to lowered V. cholerae reads are indicated by a white cross. Base maps in a–c from Natural Earth (https://www.naturalearthdata.com/) under a Universal Public Domain CC0 licence.