Extended Data Fig. 3: Read depth across orthologous, collapsed pCLR bins.

Each bin from separate, replicate pCLR assemblies corresponds to all three HiFi bins displayed in Supplementary Figure 6. Read depth that can be attributed to the reference sequence is labeled in blue, whereas phased alternative haplotypes identified via MAGPhase are labelled in alternating colors (see legend). Contig ends are denoted by vertical black bars and the x-axis represents the total length of the entire MAG with contigs placed randomly from end-to-end.