Extended Data Fig. 5: Application of MUSE to a Visium human intestine dataset, related to Fig. 5.
From: Integrative spatial analysis of cell morphologies and transcriptional states with MUSE
(a-b) tSNE visualizations of latent representations (a) and spatial plots (b) of identified clusters by transcripts-alone (left), H&E image-alone (middle) and MUSE (right) analyses. (c) Selected regions with various morphological patterns in the tissue. (d) Enhanced spatial maps of subpopulations from BayesSpace (left) or BayesSpace + MUSE (right). Details of the analysis were provided in Methods. (e) Selected zoom-in region examples with marker gene expressions or morphological patterns (top) and subpopulations defined from BayesSpace (middle) and MUSE (bottom) for four analyzed cell types in Fig. 5.
