Extended Data Fig. 7: Genome-wide comparison of de novo prediction quality in GM12878. | Nature Biotechnology

Extended Data Fig. 7: Genome-wide comparison of de novo prediction quality in GM12878.

From: Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening

Extended Data Fig. 7

For de novo prediction results from each model (Akita, DeepC, Orca and C.Origami), we measured insulation score correlation (a), observed versus expected Hi-C matrices correlation (b), mean squared error (MSE) (c) and distance-stratified correlation (d). Prediction results at cell-type-specific regions between IMR-90 and GM12878 cells were selected for this analysis. Error bars in the violin plots indicate minimum, mean and maximum values within each group.

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