Extended Data Fig. 3: VerityMap discrepant reads plot for CHM13 HiFi and ONT unitigs assembled by Verkko (left) and CHM13 v1.114 (right).
From: Telomere-to-telomere assembly of diploid chromosomes with Verkko
A. The assemblies for Chromosome 4. The Verkko assembly has no regions where a large fraction of reads are deviated even though QUAST marks an error at approximately 52 Mb. This corresponds to a position in the reference with a large fraction of deviated reads and an estimated 19 kb discrepancy. B. same for Chromosome 17. There are no regions with a large fraction (>50%) of discrepant reads in the Verkko assembly despite QUAST reporting an error at approximately 25 Mb on the reference. This corresponds to an approximately 3 kb discrepancy identified by VerityMap in CHM13 v1.1.
