Fig. 2: Multi-domain and multi-phylum contigs.
From: Troubleshooting common errors in assemblies of long-read metagenomes
Six contigs from metaMDBG, metaFlye and hifiasm-meta. For each contig, we showed the GC content, coverage in the metagenomics reads used for their assembly and gene-level taxonomy computed with Kaiju and the nr_euk database. For each assembly breakpoint, we show a zoomed-in detail of the read mapping from IGV. In these subplots, the red arrows at the end of the mapped read indicate clipping and the coloring at the end of these reads indicates that the following portion of the read mapped to another contig and similar colors indicate that multiple reads continue to map on the same contig. The blue markers indicate large INDELs (>150 bp).
