Table 1 Assembly and annotation statistics of 13 Oryzeae reference genomes
Species (genome type; cultivar) | Assembly size (Mb) | Repeat (%) | Annotated loci | Orthologs | Syntenic (%)a |
|---|---|---|---|---|---|
O. sativa vg. japonica (AA)29 | 374 | 48.6 | 38,550 | 36,823 | 96.8 |
O. sativa vg. indica (AA; 93-11)30 | 375 | 42.8 | 37,411 | 36,389 | 94.3 |
O. sativa vg. indica (AA; IR 8) | 389 | 37.9 | 35,508 | 33,146 | 96.2 |
O. sativa vg. aus (AA; N 22) | 372 | 46.3 | 36,140 | 32,216 | 94.0 |
O. nivara (AA) | 338 | 36.4 | 36,258 | 35,092 | 94.7 |
O. rufipogon (AA) | 338 | 42.1 | 37,071 | 35,892 | 96.7 |
O. glaberrima (AA)24 | 285 | 39.3 | 31,267 | 30,375 | 96.9 |
O. barthii (AA) | 308 | 38.3 | 34,575 | 33,574 | 96.4 |
O. glumaepatula (AA) | 373 | 31.4 | 35,674 | 33,855 | 95.5 |
O. meridionalis (AA) | 336 | 27.2 | 29,308 | 26,958 | 89.7 |
O. punctata (BB) | 394 | 49.6 | 31,679 | 28,259 | 90.6 |
O. brachyantha (FF)28 | 261 | 28.7 | 24,208 | 21,480 | 94.0 |
Leersia perrieri | 267 | 26.7 | 29,078 | 25,436 | 90.7 |
