Table 1 Genome statistics of maize dent and flint lines used in this study

From: European maize genomes highlight intraspecies variation in repeat and gene content

 

Zea mays ‘flint’ lines

Zea mays ‘dent’ lines

Line

EP1

F7

DK105

PE0075

B73 (v.4)

PH207

Assembly size (Mb)

2,455.3

2,392.8

2,288.2

2,198.5

2,135.1

2,156.2

Chromosome (Mb)

2,321.0

2,255.5

2,176.1

2,140.7

2,106.3

2,060.3

Scaffolds (n)

60,567

62,610

797

972

267

4,3291

Scaffold N50 (Mb)

6.13

9.48

10.39

8.64

ND

ND

Genes (n)

47,174

48,068

46,697

46,742

48,003

46,207

Orthologs

45,630

45,932

45,697

45,824

45,928

43,777

Class I repeats (% of assembly)

79.1

78.6

78.3

77.8

77.2

74.9

Class II repeats (% of assembly)

2.03

2.07

2.11

2.16

2.28

2.29

  1. The table summarizes total assembly size, total size of assembled chromosomes, number of pseudochromosomes including unanchored scaffolds, N50 of scaffolds before pseudochromosome generation, total size of undefined sequence in the genome, number of genes (including low-confidence genes; see Main text and Supplementary Information), orthologs (defined as bidirectional best Blast hits) and total percentages of class I and class II repeats. ND, not determined.
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