Extended Data Fig. 1: Genome feature and assessment of assemblies along the sequenced Oolong tea chromosomes (‘TGY’). | Nature Genetics

Extended Data Fig. 1: Genome feature and assessment of assemblies along the sequenced Oolong tea chromosomes (‘TGY’).

From: Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis

Extended Data Fig. 1

a, The circles (from outermost to innermost) represent monoploid genome in Mb, gene density, TE density, SNP density, indel density and GC content. b, Genome-wide analysis of chromatin interactions at 1 Mb resolution in the TGY genome. c, Assessment of five tea genome assemblies using LTR Assembly Index (LAI), which are DASZ, LJ43, SCZ, TGY and YK10. The x-axis lists names of these cultivars and y-axis represents LAI values. In each box plot, the bold line in centre indicates median value and bounds of box are the first (25%) and third (75%) quantiles. The minima and maxima values are present in the lower and upper whiskers, respectively. P values were calculated using the two-sided Kruskal-Wallis test without multiple comparison. d, Syntenic analysis of TGY monoploid genome assembly and TGY haplotype-resolved genome assembly.

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