Extended Data Fig. 2: Locus plots for representative loci.

(a) Regional association plots for Pulmonary Tuberculosis (PTB) in BBJ are shown. The lead variant (rs140780894) is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant. (b) Regional association plots for cholelithiasis in BBJ are shown. The lead variant (rs715) is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant. (c) Regional association plots for gastric diseases in BBJ at the PSCA locus in gastric ulcer, gastric cancer, and gastric polyp are shown. Rs2976397, which was a lead variant in gastric ulcer, is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant. (d) Regional association plots at the FUT3 locus in gall bladder polyp and cholelithiasis in BBJ are shown. Rs28362459, which was a lead variant in gall bladder polyp, is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant. (e) Regional association plots for urticaria in BBJ are shown. The lead variant (rs56043070) is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant. (f) Regional association plots for salicylic acids prescription in BBJ are shown. The lead variant (rs151193009) is colored in pink, and colors of other dots indicate linkage disequilibrium measure r² with the lead variant.