Extended Data Fig. 4: Non-reference discordance rate comparison between SHAPEIT5 and Beagle5.4.
From: Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
Non-reference discordance rate (NRD, y-axis) stratified by minor allele count (x-axis) for 1,000 white British samples genotyped with the Axiom array when using reference panels phased with either SHAPEIT5 (blue) or Beagle5.4 (black) whole genome sequencing (a) or whole exome sequencing (b). In (a) the NRD is also reported for the imputation experiment using the HRC reference panel (gray).
