Extended Data Fig. 1: Performance of all tested models on reference sequence prediction.
From: Personal transcriptome variation is poorly explained by current genomic deep learning models
Median Geuvadis gene expression (log transformed) versus gene expression predictions (log transformed) obtained by inputting the reference genome sequence to (a) Enformer, (b) Basenji2, (c) ExPecto, and (d) Xpresso. For each model, gene expression predictions from the most relevant cell type were used, as described in Methods. Measurements and predictions for the 3,259 genes with at least one statistically signficant (FDR < 5%) eQTL in the Geuvadis analysis are displayed.
