Extended Data Fig. 8: BANKSY tissue segmentation and community identification on CODEX multiplexed imaging data of the intestine.
From: BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
a). BANKSY UMAP and spatial plots colored by tissue segment annotations. b). BANKSY UMAP and spatial plots colored by BANKSY clusters. c). Non-spatial UMAP and spatial plots colored by non-spatial clusters. d). Comparison of BANKSY and non-spatial clusters with community domain annotations. e). Marker genes for smooth muscle and mature epithelial communities identified by BANKSY. Boxplots are colored as in (d). Center line: median, dotted line: mean, height of box: interquartile range (IQR), whiskers: 1.5 x IQR. CD66 Annotation: n = 3179 (mean = 1.47, median = 0.636) vs 6189 (mean = 0.107, median = -0.167) cells, BANKSY: n = 3435 (mean = 1.70, median = 0.935) vs 5232 (mean = -0.184, median = -0.249), aSMA BANKSY: n = 3222 (mean = 1.26, median = 1.04) vs 4826 (mean = 0.245, median = 0.138). All p-values < 2.2e-16.
