Extended Data Fig. 3: Nucleosome profiling reveals a BPTF-specific response at CTCF sites.
From: Systematic assessment of ISWI subunits shows that NURF creates local accessibility for CTCF
a,b. Average nucleosomal profiles at transcription start sites (TSSs, a) or distal DNAseI hypersensitive sites (distal DHSs, b) shown as heatmap for BptfΔ and Snf2hΔ cells with respective controls (Snf2hΔ and associated WT data taken from ref. 14). c. MNase average signal at distal DNaseI hypersensitive sites bound by CTCF in WT and BptfΔ cells. d. Same analysis (as in c) for distal DNaseI hypersensitive sites not bound by CTCF e. Same analysis (as in c and d) at distal DNaseI hypersensitive sites bound by REST. f–k. MNase average signal at CTCF sites in WT and all deletion lines. Canonical motif orientation (5′ to 3′) indicated by the arrow.
