Fig. 4: Genomic landscape of selection signatures during different domestication stages.

a, The Manhattan plot of XP-CLR values for 20-kb moving windows across all chromosomes. The horizontal line represented the 97th percentile. The green dots above the horizontal line represented windows that can be codetected by the Fst and XP-CLR methods (both in top 3%). b, The UpSet plot of selective sweep genes in different groups. c, The KEGG pathway annotation of selective sweep genes in different groups.