Correction to: Nature Genetics https://doi.org/10.1038/s41588-025-02113-5, published online 3 March 2025.

In the version of the article initially published online, there was a misstatement in the Methods “Phylogenetic tree analysis and PCA” section where in the sentence now reading “The dissimilarity matrix between soybean accessions was calculated with R-poppr80 and then used to construct a phylogenetic tree using the unweighted pair group method with arithmetic mean implemented in MEGA (v11)81,” the text “unweighted pair group method with arithmetic mean” replaced the original phrase “neighbor-joining method.” The error has been corrected in the HTML and PDF versions of the article.