Table 1 Summary of genome assembly and annotation of DS and MRB
Assembly | DS | MRB | ||
|---|---|---|---|---|
Haplotype A | Haplotype B | Haplotype A | Haplotype B | |
Total length (Mb) | 497.50 | 499.72 | 503.33 | 505.55 |
Contig number | 17 | 17 | 17 | 17 |
Contig length (Mb) | 497.50 | 499.72 | 503.33 | 505.55 |
Largest contig (Mb) | 40.62 | 41.82 | 42.54 | 43.02 |
Contig N50 (Mb) | 28.96 | 29.26 | 29.74 | 29.58 |
Length of Ns | 0 | 0 | 0 | 0 |
Number of telomeres | 34 | 34 | 33 | 33 |
GC content of the genome (%) | 37.38 | 37.39 | 37.45 | 37.45 |
Mapping rate (%) | 99.52 | 99.60 | 99.54 | 99.65 |
Genome coverage (%) | 99.99 | 99.99 | 99.99 | 99.99 |
BUSCO completeness of genome assembly | 98.90 | 99.00 | 98.80 | 98.90 |
Quasi-variance value | 54.21 | 54.21 | 53.91 | 53.98 |
Homology SNP ratio | 5.80 × 10−6 | 4.52 × 10−6 | 6.73 × 10−6 | 5.33 × 10−6 |
LTR Assembly Index | 23.58 | 21.38 | 21.63 | 24.31 |
Haplotype switch error ratio (%) | 0.30 | 0.69 | ||
Annotation | ||||
Number of predicted protein-coding genes | 43,330 | 43,602 | 42,784 | 42,675 |
Masked repeat sequence length (Mbp) | 262.86 | 265.14 | 270.33 | 272.23 |
Percentage of repeat sequence sequences | 52.84 | 53.06 | 53.71 | 53.85 |
BUSCO completeness of annotation | 98.40 | 97.90 | 98.60 | 98.00 |
Percentage of gene with functional annotation | 92.60 | 92.48 | 93.26 | 93.22 |
