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Adenine DNA methylation is an ancestral and widespread mark in eukaryotes

We establish that adenine DNA methylation is widespread among unicellular eukaryotes, in which it marks transcriptionally active genes. This conserved pattern depends on the AMT1 enzyme, an ancestral eukaryotic adenine methyltransferase that has been recurrently lost in multicellular lineages, such as animals and plants.

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Fig. 1: Genes marked by H3K4me3 show a strong association with 6mA patterns.

References

  1. Kong, Y. et al. Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution. Science 375, 515–522 (2022). This paper found that, contrary to previous reports, 6mA detected in plants, insects and humans was probably an artefact, calling for a reassessment of 6mA distribution across eukaryotes.

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This is a summary of: Romero Charria, P. et al. Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes. Nat. Genet. https://doi.org/10.1038/s41588-025-02409-6 (2025).

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Adenine DNA methylation is an ancestral and widespread mark in eukaryotes. Nat Genet 57, 2960–2961 (2025). https://doi.org/10.1038/s41588-025-02422-9

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