The Single Cell Notebooks provide multilingual, open-access training materials for single-cell and spatial transcriptomics analysis through reusable notebooks. They have evolved into a community-driven platform for education and capacity building, lowering language and computational barriers to support equitable participation in omics research.
This is a preview of subscription content, access via your institution
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$32.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to the full article PDF.
USD 39.95
Prices may be subject to local taxes which are calculated during checkout
References
Picelli, S. RNA Biol. 14, 637–650 (2017).
Maracaja-Coutinho, V. & Severino, P. in Transcriptomics in Health and Disease (ed. Passos, G. A.) 127–141 (Springer, 2022).
Wang, S. et al. Int. J. Mol. Sci. 24, 2943 (2023).
Atta, L. & Fan, J. Nat. Commun. 12, 5283 (2021).
Lähnemann, D. et al. Genome Biol. 21, 31 (2020).
Liu, X. et al. J. Hematol. Oncol. 17, 72 (2024).
Possik, P. A. et al. Cell 188, 5790–5796 (2025).
Maracaja-Coutinho, V. & Nakaya, H. I. Nat. Rev. Mol. Cell Biol. 27, 1–3 (2026).
Didier, J. et al. Endocr. Relat. Cancer 32, e250024 (2025).
Hemberg, M. et al. Genome Biol. 26, 358 (2025).
Clough, E. et al. Nucleic Acids Res. 52, D138–D144 (2024).
CZI Cell Science Program et al. Nucleic Acids Res. 53, D886–D900 (2025).
George, N. et al. Nucleic Acids Res. 52, D107–D114 (2024).
Armingol, E., Baghdassarian, H. M. & Lewis, N. E. Nat. Rev. Genet. 25, 381–400 (2024).
Acknowledgements
This work was supported by the Agencia Nacional de Investigación y Desarrollo (ANID, Chile): FONDECYT (1211731 to V.M.C. and 3250452 to D.P.S.), FONDAP (15130011 and 1523A0008 to V.M.C.), Anillo (ATE220016 to V.M.C.) and BECAS CHILE (2018–72190270 to E.A.); by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES, Brazil), through the PrInt program (to V.M.C.); by the Chan Zuckerberg Initiative (CZI, USA) (to A.M.E., J.R., P.S., M.B., Y.C.A., B.S.C. and V.M.C.); by the Gates Foundation (to A.K.S.); by the European Union through a Marie Skłodowska-Curie Actions Postdoctoral Fellowship (grant agreement no. 101208051 to E.A.); and by Pew Latin American Fellowship Program in Biomedical Sciences (to S.T.). We are also grateful to the Wellcome Connecting Sciences for the continuous support in several practical workshops and symposiums organized over the years in the region.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Rights and permissions
About this article
Cite this article
Rojas-Hidalgo, A., Arias-Carrasco, R., Silva, J.K. et al. The Single Cell Notebooks for inclusive and accessible training in single-cell and spatial omics. Nat Genet (2026). https://doi.org/10.1038/s41588-026-02584-0
Published:
Version of record:
DOI: https://doi.org/10.1038/s41588-026-02584-0
