Extended Data Fig. 1: childhood SLE (cSLE) dataset overview and batch effect correction.
From: Mapping systemic lupus erythematosus heterogeneity at the single-cell level
a, Number of cells per individual (n = 44). cSLE (n = 33, in purple) and cHD (n = 11; in green). b, Number of genes per individual. cSLE (n = 33, in purple) and cHD (n = 11; in green). c, Number of cells before and after filtration (which includes multiplet removal and other filtration steps that are described in Methods), across the 44 individuals (33 cSLE and 11 cHD). d, Bar plot highlighting the cell abundances across clusters (n = 27) for cSLE and cHD (left panel) and 10X run batches (right panel) before batch effect correction. e,f, Bar plot highlighting the cell abundances across clusters (n = 20) for cSLE and cHD (left panel) and 10X run batches (right panel) after BBKNN (e), or Harmony (f), batch effect correction.
