Extended Data Fig. 3: Analysis of highly-expanded T cell clones in Arm and Cl13 infection.
From: Divergent clonal differentiation trajectories of T cell exhaustion
(a) UMAPs of highly expanded clones from the Arm infection model at the indicated time points. (b) UMAPs of highly expanded clones of the Cl13 infection model at the indicated time points. (c) Stacked bar plot of the phenotypic composition of individual T cell clones with a bias towards the TexKLR fate that also contain some cells with the Texterm phenotype. Top 6 clones are shown. (d) Upset plot of the phenotype combinations of the observed and shuffled TCR clones. Bar represents the mean and error bars represent standard deviation for 50 randomized TCR shuffling iterations performed to obtain the shuffled distribution.
