Extended Data Fig. 9: Differential expression of select antigens during treated infection.
From: Profound phenotypic and epigenetic heterogeneity of the HIV-1-infected CD4+ T cell reservoir
Violin-scatter plots are shown for all significantly expressed (adjusted p value < 0.05; two-sided Wilcoxon with multiple comparison adjustment using Bonferroni method) surface markers (see Fig. 5B for significance and fold change values) that are enriched in (A) all CD4 + HIV + T-cells and (B) all CD4 + HIV- T-cells. FALSE indicates HIV- cells while TRUE indicates HIV + cells. Markers are ordered from left to right; top to bottom by order of decreasing |π-score| as seen in Fig. 5B. Cells are separated by individual and the aggregate data (across individuals) is also shown.
