Supplementary Figure 1: DRRAFTER models for ten small RNA–protein systems.
From: De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes
a–j, The best RMSD DRRAFTER models of the top ten scoring (RNA colored red, protein colored gray) overlaid with the deposited crystallographic coordinates (RNA colored cyan, protein colored gray) shown for a, 3 Å (left), 5 Å (middle), and 7 Å (right) simulated density maps for E. coli L25-5S rRNA (1dfu), b, sex-lethal RRM (1b7f), c, ribotoxin restrictocin sarcin-ricin loop analog (1jbs), d, SmpB–tmRNA complex (1p6v), e, HutP antitermination complex (1wpu), f, the mRNA-binding domain of the SelB elongation factor (1wsu), g, the NusA transcriptional regulator (2asb), h, the methyltransferase RumA in complex with rRNA (2bh2), i, the PP7 coat protein and viral RNA (2qux), and j, Puf4 bound to the 3′ UTR of target transcript (3bx2).
