Supplementary Fig. 6: scGen captures cell type specific responses patterns in two datasets of intestinal epithelial cells. | Nature Methods

Supplementary Fig. 6: scGen captures cell type specific responses patterns in two datasets of intestinal epithelial cells.

From: scGen predicts single-cell perturbation responses

Supplementary Fig. 6

(a) Violin plot for top 10 specific response genes out of 500 (top 250 upregulated and top 250 downregulated) DEGs according to gene specificity score (Supplementary Note 6) for H.poly (a) and Salmonella (b) datasets from Haber et al. across control (c), real stimulated (r.s), and predicted stimulated (p.s) for different cell types. Vertical axis: expression distribution for top 10 specific genes. Horizontal axis: control, real and predicted distribution by scGen for different cell types and n shows the number of samples for each violin plot.

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