Supplementary Fig. 10: scGen removes batch effects. | Nature Methods

Supplementary Fig. 10: scGen removes batch effects.

From: scGen predicts single-cell perturbation responses

Supplementary Fig. 10

(a) UMAP visualization of four technically diverse pancreatic datasets (n=14,693) with their corresponding batch and cell types. We report average silhouette width (ASW) for batches in the original data (ASW = 0.2130, lower is better for batch-effect evaluation). (b) Data corrected by scGen mixes shared cell types from different studies while preserving study specific cell types as independent (ASW = −0.0917). ASW was calculated based on the n=14,693 cells with their study labels.

Back to article page