Supplementary Figure 7: Performance comparison of BindSpace, PWM, LASSO and DeepBind for binary task of distinguishing TF-occupied ATAC-seq peaks versus TF-unoccupied ATAC-seq peaks.
From: BindSpace decodes transcription factor binding signals by large-scale sequence embedding
Performance of BindSpace, PWM, LASSO and DeepBind on the task of distinguishing TF-occupied ATAC-seq peaks versus TF-unoccupied ATAC-seq peaks in K562 (top, n=17 TFs) and GM12878 (bottom, n=11 TFs) as evaluated by F1 score (left) and auROC (right). One-sided Wilcoxon signed rank test is used when the direction is clear, otherwise two-sided test is used (noted in the figure). Boxplots show median, upper and lower quartiles, and highest and lowest values excluding outliers.
