Supplementary Figure 10: Multiclass prediction performance of TF binding at bZIP ChIP-seq peaks in HepG2 cell line. | Nature Methods

Supplementary Figure 10: Multiclass prediction performance of TF binding at bZIP ChIP-seq peaks in HepG2 cell line.

From: BindSpace decodes transcription factor binding signals by large-scale sequence embedding

Supplementary Figure 10

Multiclass classification performance of BindSpace, PWM, LASSO and DeepBind for bZIP family members in the HepG2 cell line. For each plot, we performed multiclass classification using BindSpace on the top 10,000 peaks for bZIP TF ChIP-seq and show the proportion of predicted labels for each model. BindSpace successfully ranked the ChIP-ed TF above other family members in 5 out of 7 cases, as indicated by *, as compared to 3 out of 7 for PWM, 3 out of 7 for LASSO, 2 out of 7 for DeepBind.

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