Supplementary Figure 11: Features chosen by Garnett have higher expression and high specificity than other genes.
From: Supervised classification enables rapid annotation of cell atlases
A) Boxplots of the log10 of the total number of reads per gene in the mouse nervous system dataset. Genes are grouped by whether they are input markers (from the marker file, n = 267 genes), classifier features (chosen by elastic-net regression as discriminatory among cell types, n = 1239 genes), or remaining genes (n = 26,492 genes). B) Similar to (A) but showing the log10 of the inverse-document-frequency for each of the genes. (Boxplot elements: center line, median; box limits, upper and lower quartiles; whiskers, 1.5x interquartile range; points, outliers; gene n is the same as (A)).
