Supplementary Figure 5: Garnett can classify cells from single-cell chromatin accessibility datasets.

A) t-SNE plot of the Cusanovich et al.⁷ mouse single-cell ATAC-seq atlas (n = 81,173). Garnett used publicly available Cicero¹⁰ gene activity scores in place of expression data to classify cell types. The first panel is colored by Cusanovich et al.⁷ manually assigned cell type labels. The second and third panel are colored by the Garnett cluster-agnostic and cluster-extended types respectively. B) Heatmaps comparing the reported cell types versus the Garnett cluster-agnostic and cluster-extended types. Color represents the percent of cells of a certain reported type labelled as each type by Garnett.