Extended Data Fig. 1: Diagram of a multipath alignment.
From: Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
A diagrammatic comparison between the multipath alignment output of VG MPMAP and the single-path alignment output of other graph aligners (such as VG MAP). a A read and b a sequence graph, which have been colored to indicate which parts of the read could plausibly align to which parts of the graph. c A single-path alignment. The read sequence is aligned to one path from the graph. d A multipath alignment. The alignment can split and rejoin to express the alignment uncertainty to different paths in the graph.
