Extended Data Fig. 2: Mapping benchmark for primary alignments using RNA-seq data from NA12878. | Nature Methods

Extended Data Fig. 2: Mapping benchmark for primary alignments using RNA-seq data from NA12878.

From: Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

Extended Data Fig. 2: Mapping benchmark for primary alignments using RNA-seq data from NA12878.

Mapping error and recall for VG MPMAP and three other methods using simulated Illumina data. Colored numbers indicate different mapping quality thresholds. Reads are considered correctly mapped if their primary alignments cover 90% of the true reference sequence alignment.

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