Extended Data Fig. 3: Mapping benchmark stratified by edit distance using RNA-seq data from NA12878. | Nature Methods

Extended Data Fig. 3: Mapping benchmark stratified by edit distance using RNA-seq data from NA12878.

From: Haplotype-aware pantranscriptome analyses using spliced pangenome graphs

Extended Data Fig. 3: Mapping benchmark stratified by edit distance using RNA-seq data from NA12878.

Mapping recall (a) and error (b) for VG MPMAP and three other methods using simulated Illumina data as a function of edit distance. Unique alignments are primary alignments with a mapping quality of at least 30. Reads are considered correctly mapped if their alignments cover 90% of the true reference sequence alignment.

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