Extended Data Fig. 5: Experiments conducted for exploring possible chemical mechanisms underlying staining contrast generation. | Nature Methods

Extended Data Fig. 5: Experiments conducted for exploring possible chemical mechanisms underlying staining contrast generation.

From: High-contrast en bloc staining of mouse whole-brain and human brain samples for EM-based connectomics

Extended Data Fig. 5

(a,b) Membrane contrast after adding an intermediate CaC washing step between OsO4 and FeCN. Imaged in SEM in high vacuum, electron dose 31 e/nm2. (c) Membrane contrast after staining with potassium osmate (vi) (note yielded precipitation band). (d) UV-vis spectrum of potassium osmate (vi) in sodium cacodylate buffer over 24 h. (e,f) 2 mm samples stained with ‘reduced osmium’ protocol for 3 h vs. 24 h. (g) Membrane contrast after adding CaCl2 into OsO4 before FeCN incubation. (h) Membrane contrast after OsO4 incubation at 4 °C before FeCN incubation. SEM acquisition for panels c,e,f,g,h was performed in low vacuum at 30 Pa, maximum electron dose of 70 e/nm2. (i-m) Possible chemical logic underlying staining results (i) Comparison of bright-field color appearance of samples stained in OsO4 for 2 h, 24 h, 24 h (diluted to evaluate color), and stained in OsO4(24 h)->CaC->FeCN (intermediate CaC wash to remove OsO4), top row. For comparison, pure staining solutions are shown below: Os(vi) and in vitro reaction of Os(vi) with FeCN (bottom). Note that sample solution after 24 h OsO4 incubation appears similarly colored as Os(vi) solution (pink); and sample solution after Os-Cac-FeCN staining appears similarly colored as Os(vi)+FeCN reaction in vitro (bluegreen). (j). (left) Raman spectrum measurements of the product of Os(vi) + FeCN showing a shifted Os(vi) peak; (middle) in the wavelength range corresponding to FeCN(ii) and FeCN(iii), there was only signal consistent with FeCN(ii) peaks, but not FeCN(iii), suggesting the reaction between Os(vi) and FeCN was not a redox reaction. (k). The same Os(vi) signal was observed in brain staining solution after FeCN staining and in-vitro Os(vi) + FeCN reaction. (l) Sketch summary of the possible chemical reactions (see in Supplementary Results). (m) Summary of Os(vi) coordination chemistry potentially relevant for staining mechanisms.

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