Extended Data Fig. 6: Benchmarking of dimensionality reduction methods on the Zemke et al. mouse dataset. | Nature Methods

Extended Data Fig. 6: Benchmarking of dimensionality reduction methods on the Zemke et al. mouse dataset.

From: A fast, scalable and versatile tool for analysis of single-cell omics data

Extended Data Fig. 6

a, Table displaying normalized scores (0–1 range) of four metrics used to evaluate each method’s bio-conservation. A score of 1 indicates optimal performance. See Methods for metric details. b, UMAP visualization of the embeddings generated by the best performing method and the worst performing method. Cells are color-coded by cell type labels.

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