Extended Data Fig. 2: Benchmarking of dimensionality reduction methods on 10× Brain 5k and PBMC 10k datasets. | Nature Methods

Extended Data Fig. 2: Benchmarking of dimensionality reduction methods on 10× Brain 5k and PBMC 10k datasets.

From: A fast, scalable and versatile tool for analysis of single-cell omics data

Extended Data Fig. 2

a,c, Tables displaying normalized scores (0–1 range) of four metrics used to evaluate each method’s bio-conservation on the 10× Brain 5k (a) and PBMC 10k (c) datasets. A score of 1 indicates optimal performance. See Methods for metric details. b,d, UMAP visualizations of the embeddings generated by the best performing method and the worst performing method on the 10× Brain 5k (b) and PBMC 10k (d) datasets. Cells are color-coded by cell type labels.

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