Extended Data Fig. 3: Benchmarking of dimensionality reduction methods on the Chen et al. and GSE194122 datasets.
From: A fast, scalable and versatile tool for analysis of single-cell omics data
a,c Tables displaying normalized scores (0–1 range) of four metrics used to evaluate each method’s bio-conservation on the Chen et al. (a) and GSE194122 (c) datasets. A score of 1 indicates optimal performance. See Methods for metric details. b,d, UMAP visualizations of the embeddings generated by the best performing method and the worst performing method on the Chen et al. (b) and GSE194122 (d) datasets. Cells are color-coded by cell type labels.
