Extended Data Fig. 9: Computational runtime for TISSUE. | Nature Methods

Extended Data Fig. 9: Computational runtime for TISSUE.

From: TISSUE: uncertainty-calibrated prediction of single-cell spatial transcriptomics improves downstream analyses

Extended Data Fig. 9

a, Bar plots of total runtimes for spatial gene expression prediction computations over 10 predictions to generate estimated predictions on all calibration genes. Bars denote the mean runtime across 10 instances of TISSUE prediction and each dot represents the runtime for one instance of generating TISSUE predictions using 10-fold cross-validation. b, Bar plots of total runtimes for TISSUE prediction interval calculation including computation of cell-centric variability and calibration score sets. Bars denote the mean runtime across 10 instances of TISSUE prediction interval calculation and each dot represents the runtime for one instance of TISSUE prediction interval calculation.

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