Extended Data Fig. 5: The CytoTRACEKernel recovers developmental progression, and terminal and initial states faithfully.
From: CellRank 2: unified fate mapping in multiview single-cell data
a. Distribution of pseudotimes from the CytoTRACEKernel (left), DPT (center), and Palantir (right), stratified by embryo stage (top row) and colored according to Fig. 3a. Box plots indicate the median (center line), interquartile range (hinges), and 1.5x interquartile range (whiskers) (E0-E3: N = 4574 cells, E6-E9: N = 7368 cells, E12-E15: N = 6241 cells, E18-E21: N = 6543 cells, E24-E27: N = 6302 cells); UMAP embeddings (bottom) are colored by pseudotime. b. Terminal states (left) and initial state (right) inferred using the CytoTRACEKernel.
