Fig. 3: Fast calculation of morphological features and skeletons. | Nature Methods

Fig. 3: Fast calculation of morphological features and skeletons.

From: CAVE: Connectome Annotation Versioning Engine

Fig. 3: Fast calculation of morphological features and skeletons.

a, The basket cell from Fig. 1c broken into L2 chunks where each chunk is colored differently. For each chunk, the L2-Cache stores a number of features, such as area, volume and representative coordinate. b, A skeleton derived from the ChunkedGraph and L2-Cache without consulting the segmentation data. c, Client-side timings for calculating neuron volumes using ChunkedGraph and L2-Cache for neurons in FlyWire and MICrONS65 (NFlyWire = 101,554; NMICrONS65 = 1,357). The timing for the neuron in b is highlighted. d, Client-side timings for creating skeletons from ChunkedGraph and L2-Cache (NFlyWire = 78,030; NMICrONS65 = 1,357). Norm., normalized. e, Client-side timings for creating skeletons plotted against the size of the skeletons. Each dot is a query for a single neuron (see d for the number of samples). Scale bars, 100 µm (insets: scale bar, 5 µm).

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