Fig. 3: Evaluation and application of the DeepMVP for PTM site prediction.

a–h, Performance comparison between DeepMVP and other models for site prediction for six PTM types, evaluated on the basis of AUROC. i, Proportion of PTM sites nominated in this study in the human proteome for the six PTM types and their classification into three confidence levels. j, Comparison between S/T phosphosite prediction results against phosphosites detected in two phosphoproteomic experiments, and the whole proteome of SARS-CoV-2.