Extended Data Fig. 5: Nicheformer fine-tuning datasets - MERFISH mouse brain.
From: Nicheformer: a foundation model for single-cell and spatial omics
A-C) Region (A), niche (B), and cell type (C) label distribution across all tissue sections in the MERFISH mouse brain data with the test set highlighted. D) Spatial allocation of cells in the five test tissue sections of the MERFISH mouse brain E) UMAP visualization of the Nicheformer embedding of the MERFISH mouse brain dataset colored by region label. F) Exemplary brain slice of the MERFISH mouse brain dataset colored by region label.
