Extended Data Fig. 3: Qualitative assessment of gene expression predictions in zebrafish development.
From: STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport
(A) Zebrafish slices at time points 18hpf and 24hpf with cells colored by their cell type annotations; (B, C) Visual representation of the linear optimal transport matching between the gene expression predicted by each method (STORIES in (B) and PRESCIENT in (C)) and the target gene expression measured at the next time point for each cell type present at this time point of the zebrafish development dataset. For each example, the left slice displays the positions of cells belonging to that cell population and the right slice displays the cells they are matched with at the following time point.
