Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Research Briefing
  • Published:

Live imaging of neuronal dynamics in transparent mouse brains

Making live mammalian tissues transparent for imaging experiments without compromising their normal cellular functions has been a long-standing challenge. An isotonic and minimally invasive optical clearing medium for live mammalian cells and tissues (named SeeDB-Live) paves the way for deep-tissue live imaging of cellular functions ex vivo and in vivo.

This is a preview of subscription content, access via your institution

Access options

Buy this article

USD 39.95

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Optical clearing of the mouse cerebral cortex in vivo.

References

  1. Ueda, H. R. et al. Tissue clearing and its applications in neuroscience. Nat. Rev. Neurosci. 21, 61–79 (2020). A review article on tissue clearing techniques for fixed mammalian tissues.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Zhu, D. et al. Recent progress in tissue optical clearing. Laser Photonics Rev. 7, 732–757 (2013). A review article that summarizes tissue clearing techniques applicable to tissues in vivo, such as skin and skull.

    Article  CAS  Google Scholar 

  3. Ou et al. Achieving optical transparency in live animals with absorbing molecules. Science 385, eadm6869 (2024). This study achieved optical transparency in live animals using safe food dyes, but the solution that was used was extremely hypertonic.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Ke, M.-T., Fujimoto, S. & Imai, T. SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction. Nat. Neurosci. 16, 1154–1161 (2013). This study reported SeeDB, a fructose-based tissue clearing agent that is safe and useful for fixed tissues but has high osmolality.

    Article  CAS  PubMed  Google Scholar 

Download references

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This is a summary of: Inagaki, S. et al. Isotonic and minimally invasive optical clearing media for live cell imaging ex vivo and in vivo. Nat. Methods https://doi.org/10.1038/10.1038/s41592-026-03023-y (2026).

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Live imaging of neuronal dynamics in transparent mouse brains. Nat Methods (2026). https://doi.org/10.1038/s41592-026-03022-z

Download citation

  • Published:

  • Version of record:

  • DOI: https://doi.org/10.1038/s41592-026-03022-z

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing